PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G13180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 455aa    MW: 48620.7 Da    PI: 4.705
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G13180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.71.1e-27180234156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++
  OPUNC06G13180.1 180 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 234
                      6799*****************.********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.924177236IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-27178237IPR009057Homeodomain-like
SuperFamilySSF466896.9E-19178237IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-26180234IPR006447Myb domain, plants
PfamPF002496.3E-8183232IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MLAVSPALCP DIEERAGVAG DAGMEVVGMS SDMEFDFSVD DIDFGDFFLR LEDGDVLPDL  60
EVDPAEIFTD FEAIATSGGE GVQDQEVPTV ELLAPTEDVG VVDPCGDVVG EENAAFSEAG  120
EEKGGCNHDE DAAEANADDG ADGAAAAEAK SSSPSSTTSS SQEAESRHKS SSKSSQGKKK  180
AKVDWTPELH RRFVQAVEQL GIDKAVPSRI LEIMGIDSLT RHNIASHLQK YRSHRKHMIA  240
REVEAASWTQ RRQIYAAGGG AVAKRPESNV WAVPTIGFPP PPPPPHPAPI QHFGRPLHVW  300
GHPTMDSSRV PMWPPRHLVP RGPAPPWVPP PPSPSDPAFW HHPYMRGPGH VPTQGTPCMA  360
MPMPAARFPA PPVPGLVPCP MYRPLTPQAL ASKNQQDAQL QLQVQPTSES IDAAIGDVLS  420
KPWLPLPLGL KPPSVDSVMG ELQRQGVANV PPACG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17177232257ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0619460.0AK061946.1 Oryza sativa Japonica Group cDNA clone:001-042-E04, full insert sequence.
GenBankAK0651840.0AK065184.1 Oryza sativa Japonica Group cDNA clone:J013002D22, full insert sequence.
GenBankAK0989090.0AK098909.1 Oryza sativa Japonica Group cDNA clone:J013002F22, full insert sequence.
GenBankAK1221610.0AK122161.1 Oryza sativa Japonica Group cDNA clone:J033147G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644244.10.0PREDICTED: probable transcription factor GLK1
SwissprotQ5Z5I40.0GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLA0A0E0LBE40.0A0A0E0LBE4_ORYPU; Uncharacterized protein
STRINGORGLA06G0126200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.18e-53GBF's pro-rich region-interacting factor 1